Optimizing Shape Complementarity Enables the Discovery of Potent Tricyclic BCL6 Inhibitors

J Med Chem. 2022 Jun 23;65(12):8169-8190. doi: 10.1021/acs.jmedchem.1c02174. Epub 2022 Jun 3.

Abstract

To identify new chemical series with enhanced binding affinity to the BTB domain of B-cell lymphoma 6 protein, we targeted a subpocket adjacent to Val18. With no opportunities for strong polar interactions, we focused on attaining close shape complementarity by ring fusion onto our quinolinone lead series. Following exploration of different sized rings, we identified a conformationally restricted core which optimally filled the available space, leading to potent BCL6 inhibitors. Through X-ray structure-guided design, combined with efficient synthetic chemistry to make the resulting novel core structures, a >300-fold improvement in activity was obtained by the addition of seven heavy atoms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • BTB-POZ Domain*
  • Protein Binding
  • Proto-Oncogene Proteins c-bcl-6

Substances

  • Proto-Oncogene Proteins c-bcl-6